Homologs of genes expressed in Caenorhabditis elegans GABAergic neurons are also found in the developing mouse forebrain

Hammock, Elizabeth AD; Eagleson, Kathie L; Barlow, Susan; Earls, Laurie R; Miller, David M; Levitt, Pat

doi:10.1186/1749-8104-5-32

Neural Development

Table 3 Summary of transcript expression in C57Bl6j mice from E13.5 to E15.5

From: Homologs of genes expressed in Caenorhabditis elegans GABAergic neurons are also found in the developing mouse forebrain

	Brain expression					VZ					SVZ					Mantle					Cortex
Mouse gene name	V 14.5	G 14.5	A 13.5	A 15.5	B 15	V 14.5	G 14.5	A 13.5	A 15.5	B 15	V 14.5	G 14.5	A 13.5	A 15.5	B 15	V 14.5	G 14.5	A 13.5	A 15.5	B 15	V 14.5	G 14.5	A 13.5	A 15.5	B 15
Pitx1	+	+	ND	ND	ND	-	-				-	-				-	-				-	-
Pitx2	+	ND	+	ND	+	-		-		-	-		-		-	-		-		-	-		-		-
Pitx3	+	ND	ND	ND	-	-				-	-				-	-				-	-				-
Foxb2	-	ND	ND	+	ND	-			-		-			-		-			-		-			-
FoxL1	ND	ND	ND	ND	ND
Foxa1	-	ND	+	+	+	-		-	-	-	-		-	-	-	-		-	-	-	-		-	-	-
Foxb1	-	+	+	+	ND	-	-	-	-		-	-	-	-		-	-	-	-		-	-	-	-
Foxi2	-	ND	ND	ND	ND	-					-					-					-
Foxd2	ND	+	+	ND	ND		-	+				-	+				-	-				-	+
Foxq1	ND	+	ND	+	ND		-		+			-		-			-		-			-		+
Foxa3	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-
Jup	+	+	ND	ND	ND	-	-				-	-				-	-				-	-
Ctnnb1	+	+	+	ND	ND	+	+	+			+	+	+			-	+	-			-	+	+
Ip6k1	+	+	ND	ND	ND	-	-				-	+				+	+				+	+
Ip6k2	-	+	ND	ND	ND	-	-				-	+				-	+				-	+
Ip6k3	ND	ND	ND	ND	ND
Ipmk	+	ND	ND	ND	ND	+					+					+					+
Phox2a	ND	+	ND	-	ND		-		-			-		-			-		-			-		-
Arx	-	ND	+	+	ND	-		+	-		-		+	+		-		+	+		-		+	+
Alx4	-	+	ND	+	ND	-	-		-		-	+		-		-	-		-		-	-		-
Phox2b	-	ND	+	+	ND	-		-	-		-		-	-		-		-	-		-		-	-
Pax7	-	ND	ND	+	ND	-			-		-			-		-			-		-			-
Nkx2-5	-	ND	ND	ND	ND	-					-					-					-
Nkx2-3	+	+	ND	ND	ND	+	-				-	-				-	+				-	-
Nkx2-1	+	+	+	+	ND	-	-	-	-		+	+	+	+		-	-	-	-		-	-	-	-
Nkx2-4	ND	ND	ND	ND	ND
Hnf4g	-	+	-	-	ND	-	-	-	-		-	-	-	-		-	-	-	-		-	-	-	-
Hnf4a	-	ND	ND	ND	ND	-					-					-					-
Rarg	-	+	ND	+	ND	-	+		-		-	-		-		-	-		-		-	+		-
Znf541	ND	ND	ND	ND	ND
Trerf1	-	+	ND	ND	ND	-	+				-	-				-	-				-	+
C130039O16Rik	-	+	ND	ND	ND	-	+				-	-				-	-				-	+
Mier1	-	ND	ND	ND	ND	-					-					-					-
Rcor1	-	+	+	+	ND	-	+	+	+		-	-	+	+		-	+	+	-		-	-	+	-
Foxj3	+	ND	ND	+	ND	+			-		+			-		-			-		-			-
Ncor1	ND	ND	+	+	+			+	+	+			+	-	-			-	-	-			+	+	+
Ezh2	+	+	ND	ND	ND	+	+				+	-				-	+				-	+
Ezh1	-	ND	ND	ND	ND	-					-					-					-
Suv39h1	+	+	ND	ND	+	+	+			+	+	-			-	-	-			-	+	-			-
Taf11	-	+	ND	ND	ND	-	+				-	-				-	-				-	+
Dspp	-	ND	ND	ND	ND	-					-					-					-
Myst3	+	ND	ND	ND	ND	+					-					+					+
Rxrb	+	+	-	-	ND	+	+	-	-		-	-	-	-		-	-	-	-		+	+	-	-
Cux1	+	ND	+	ND	ND	+		+			+		+			+		-			+		+
Cux2	+	+	+	+	ND	-	-	-	-		-	-	-	-		+	+	+	+		+	+	+	+
Myh8	+	ND	ND	ND	ND	+					-					-					-
Myh10	ND	+	ND	ND	ND		+					-					+					+
Clip1	-	+	ND	ND	ND	-	+				-	-				-	+				-	+
Myh11	ND	ND	ND	ND	ND
Med6	-	+	-	-	ND	-	+	-	-		-	-	-	-		-	-	-	-		-	-	-	-
Rpgrip1	ND	+	ND	ND	-		+			-		-			-		-			-		+			-
Sptbn1	-	+	ND	ND	ND	-	+				-	-				-	-				-	+
Ncl	+	+	ND	ND	+	+	+			+	-	-			-	-	-			-	-	-			+
Pnn	+	ND	+	ND	+	+		+		+	-		-		-	-		-		-	-		-		-
Thoc4	+	+	ND	ND	ND	+	+				+	-				-	-				-	-
Refbp2	+	ND	ND	ND	ND	+					-					-					+
Fox1	+	+	ND	ND	ND	-	-				-	-				+	+				+	+
Hist1h1a	+	ND	ND	ND	ND	+					+					+					+
Med8	-	+	ND	ND	-	-	+			-	-	-			-	-	-			-	-	+			-
Pou6f2	+	+	+	ND	ND	-	-	-			-	-	-			-	+	-			-	-	-
Tcfap4	+	+	+	-	ND	+	+	+	-		+	-	+	-		+	-	-	-		+	+	+	-
Hey2	ND	+	+	+	ND		-	+	-			-	-	-			-	-				+	-	-

V_14.5 (Vanderbilt Study), G_14.5 (GenePaint data), A_13.5 to A_15.5 (Allen Brain Atlas data at two ages), B₁₅ (BGEM dataset). ND or empty cell = no data. SVZ, subventricular zone; VZ, ventricular zone.

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ISSN: 1749-8104

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