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Table 4 Manual search for genes associated with axonal regeneration processes show that they are differentially expressed in regenerative and non-regenerative stages

From: Genome-wide expression profile of the response to spinal cord injury in Xenopus laevis reveals extensive differences between regenerative and non-regenerative stages

Category GenBank ID Gene name UniGene cluster description log2FC
     R1 R2 R6 NR1 NR2 NR6
Axonal guidance BC108561 ngfr Nerve growth factor receptor 0.21 -0.20 -0.31 -0.16 -0.05 1.20
  X91191 epha4-a EPH receptor A4 -0.25 -0.09 0.25 -0.42 -0.48 -1.36
  BC043626 epha4-b EPH receptor A4 -0.17 0.13 0.52 -0.51 -0.16 -1.28
  BC060745 epha2 EPH receptor A2 -0.42 0.01 -0.01 0.07 1.01 1.46
  BC077964 sema4b Sema domain, immunoglobulin domain (Ig), transmembrane domain and short cytoplasmic domain, (semaphorin) 4B -0.35 -0.01 0.19 0.08 0.43 -1.00
  BC124869 sema3f Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F 0.19 0.30 0.18 0.29 1.15 1.64
  AF427525 reln Reelin -0.30 0.21 0.32 -0.52 0.26 -1.16
Intrinsic factors AY116304 klf15 Krüppel-like factor 15 -1.49 -0.58 -0.43 -0.46 0.64 -0.84
  BC092147 klf10 Krüppel-like factor 10 -0.18 -0.10 -0.05 0.28 0.74 1.72
  BC054214 socs3 Suppressor of cytokine signaling 3 2.12 2.00 1.72 2.15 3.72 4.62
  BC068752 socs3 Suppressor of cytokine signaling 3 3.31 2.05 1.01 3.40 4.45 6.55
  BC044717 stat3.2 Signal transducer and activator of transcription 3 (acute-phase response factor), gene 2 0.74 0.61 0.19 0.55 0.98 2.10
  BC086272 stat6 Signal transducer and activator of transcription 6, interleukin-4 induced -0.43 0.72 0.47 0.38 0.57 1.62
  1. Two categories are shown: genes related to axonal guidance and genes associated with intrinsic factors involved in axonal regeneration. FC, fold change (transected/sham).