Gene | Forward Primer Sequence | Reverse Primer Sequence | Product Size, bp | Incubation (P0-P7), h | Incubation (P14-P22), h |
---|---|---|---|---|---|
For 3’-UTR probes | |||||
 Ankrd13b | TCCAAGGGCGGAGGCAGGT | ATCAGGGAAGGGAAGAGGAAG | 821 + (26) | 5 | 6 |
 Cdh4 | AAGTCCCAGCACTGATGAAAAA | CACCACCCGAATTGTTTGC | 501 + (26) | 6 | 6 |
 Elfn1 | CCTGCGCAAGAAGGTTCAGTT | CTTGCTTGCTTGCACCAGGC | 367 + (26) | 6 | 6 |
 Eml1 | CACTGTGATTTCTGTTTTGTCTA | GCCAGCCTCCCAAAGGGAG | 473 + (26) | 6 | 3 |
 Fam19a4 | AACTTTATGAACCTTGGAGAATG | TGAAATTGGAGGCAAGATGACT | 498 + (26) | 6 | 3 |
 Foxp2 | CTGTGCTGTTAGTGTAAAGATGT | GTTGCTTTCTAGAGTGTCATAAC | 503 + (26) | 3 | 3 |
 Gabra1 | GTTCTTTTAGTCGTATTCTGTTG | GAGCTTGCAAAATAGATTTGCC | 900 + (26) | 6 | 6 |
 Grm4 | GCCACACAGGCCTTCCTTCC | CTTCGAAACACACTCAAGATTAG | 433 + (26) | 6 | 5 |
 Hpca | CCTCTCCCTCGTGTCTATCC | GAGCTGGGACAAGAAGTGTTC | 443 + (26) | 6 | 3 |
 Plppr3 | CAGTGCCAGCTCCGACTCTT | TTGCCAGGCTTAGTCCTGGTA | 469 + (26) | 6 | 6 |
 Mapk10 | GTCACAACGCACTCACGAAAG | ATCTGTATCTACATCCATCTGAC | 364 + (26) | 6 | 5 |
 Nptx1 | GGGGCTGAGAGCTCACTTG | ACCACTTCGAGCCACGCTC | 600 + (26) | 6 | 5 |
 Nptx2 | TCTCCGTCCCAGAGGCCAC | CAGTTCCCTCAGACGGAAAG | 486 + (26) | 6 | 6 |
 Ntrk1 | ATCGAGTGTATCACGCAGGGC | TATGATGGATGCTGGCCATGAA | 328 + (26) | 6 | 5 |
 Pcdh20 | GACGAGTTTCCTACTTCTTGGG | TTATCGTTGATGTCCAGAAGAAG | 511 + (26) | 6 | 9 |
 Pick1 | ACCACTGTAGGACAGCGAAGG | TTATTCAATACAGGCCCAGCTTC | 393 + (26) | 6 | 9 |
 Pip5kl1 | ACAAGGTGTGTCGAAGTCGAAG | TAAGGGTTGGGGTCAGGGTC | 458 + (26) | 6 | 6 |
 Pnkd | CTTCACCATCCTCTTCATCACT | GAAGGTGGAAGATAGACTAGCC | 360 + (26) | 6 | 6 |
 Rims1 | CACCCTCCTCTGGAGTCCAG | TGTGTCTGCAGTTTATACCAATG | 500 + (26) | 2 | 3 |
 Tmem25 | TGCCTGTCCCTGTTGTGACC | GTACAAAACGATGCAGAGCTAC | 687 + (26) | 6 | 6 |
 Tmem91 | CAACAAGGCTTGGGCCAAGG | GGGTATCTTTAATTTCTCACATTG | 348 + (26) | 6 | 5 |
 Tshz2 | GCAGAAAGAAAGGGAAATATGTG | CATCACCTATTTGTTCTCTTCG | 418 + (26) | 6 | 6 |
 Tusc5 | CTGGAGATCTCCGAACCTACAT | ATGGAGGATTTCCGTATGGCC | 492 + (26) | 6 | 5 |
 Pou4f1 (control) | TGTGTAGAAGATCCCCTTTGG | GCACAGAAATGGTTCTGATG | 519 + (26) | 3 | 3 |
For transcript-specific probes | |||||
 Clcc1 (pr.1 + pr.9) ^ | CACAGCTGCGGGCCGAGC | CTGAGATTTCCTCATCGTTCCT | 208 + (26) |  |  |
 Clcc1 (pr.2 + pr.9) | AGTCCGCTCGGGACTCCAG | CTGAGATTTCCTCATCGTTCCT | 181/252 + (26) | 7 | 7 |
 Clcc1 (pr.3 + pr.9) ^ | TGTTTGAGGTAGGCGGCTCG | CTGAGATTTCCTCATCGTTCCT | 220 + (26) |  |  |
 Clcc1 (pr.4 + pr.9) ^ | TCGGCGTCTTCCGCGGCC | CTGAGATTTCCTCATCGTTCCT | 203 + (26) |  |  |
 Clcc1 (pr.5 + pr.9) ^ | TCCCTCTGAAAGAGCAGGCAG | CTGAGATTTCCTCATCGTTCCT | 172 + (26) |  |  |
 Clcc1 (pr.6 + pr.9) ^* | TGAGTGGGCGCTCTTCGGTG | CTGAGATTTCCTCATCGTTCCT | 293 + (26) |  |  |
 Clcc1 (pr.7 + pr.9) ^ | CGTTTCCAGGATACACCGAGA | CTGAGATTTCCTCATCGTTCCT | 300 + (26) |  |  |
 Clcc1 (pr.2 + pr.8) ^* | AGTCCGCTCGGGACTCCAG | CGGGTTAAGGGAAGTCAAATTC | 199/270 + (26) |  |  |
 Clcc1(pr.7 + pr.8) ^^ | CGTTTCCAGGATACACCGAGA | CGGGTTAAGGGAAGTCAAATTC | 159 + (26) | 4 | 3 |
 Clcc1(pr.10 + pr.11)^ | GTGAGGTCTGGAACATCAGAG | CATAAACACATTATATGGATCTA | 432 + (26) |  |  |
 Pnkd (pr.1 + pr.2) | TGGGACCCGAACATGGCGG | GGCTAGCCCCACGGCTTTC | 246 (+  26) | 2 | 3 |
 Pnkd (pr.3 + pr.4) * | TGTGGTATCCTCTTCTTCGTC | CTCCTTCCACGGTGTGGAAG | 289 + (26) | 2 | 3 |
 Pnkd (pr.5 + pr.6) | CCCAGCATGGCTTGGCAGG | CCGATTCGGAAGAGCAGCCG | 167 (+  26) | 2 | 3 |
 Pnkd (pr.5 + pr.7) ^ | CCCAGCATGGCTTGGCAGG | ATTGAAGAGGCGGGGCTGAG | 282 (+  26) |  |  |