Olfactory discrimination largely persists in mice with defects in odorant receptor expression and axon guidance
© Knott et al.; licensee BioMed Central Ltd. 2012
Received: 5 December 2011
Accepted: 4 May 2012
Published: 4 May 2012
The defining feature of the main olfactory system in mice is that each olfactory sensory neuron expresses only one of more than a thousand different odorant receptor genes. Axons expressing the same odorant receptor converge onto a small number of targets in the olfactory bulb such that each glomerulus is made up of axon terminals expressing just one odorant receptor. It is thought that this precision in axon targeting is required to maintain highly refined odor discrimination. We previously showed that β3GnT2−/− mice have severe developmental and axon guidance defects. The phenotype of these mice is similar to adenylyl cyclase 3 (AC3) knockout mice largely due to the significant down-regulation of AC3 activity in β3GnT2−/− neurons.
Microarray analysis reveals that nearly one quarter of all odorant receptor genes are down regulated in β3GnT2−/− mice compared to controls. Analysis of OR expression by quantitative PCR and in situ hybridization demonstrates that the number of neurons expressing some odorant receptors, such as mOR256-17, is increased by nearly 60% whereas for others such as mOR28 the number of neurons is decreased by more than 75% in β3GnT2−/− olfactory epithelia. Analysis of axon trajectories confirms that many axons track to inappropriate targets in β3GnT2−/− mice, and some glomeruli are populated by axons expressing more than one odorant receptor. Results show that mutant mice perform nearly as well as control mice in an odor discrimination task. In addition, in situ hybridization studies indicate that the expression of several activity dependent genes is unaffected in β3GnT2−/− olfactory neurons.
Results presented here show that many odorant receptors are under-expressed in β3GnT2−/− mice and further demonstrate that additional axon subsets grow into inappropriate targets or minimally innervate glomeruli in the olfactory bulb. Odor evoked gene expression is unchanged and β3GnT2−/− mice exhibit a relatively small deficit in their ability to discriminate divergent odors. Results suggest that despite the fact that β3GnT2−/− mice have decreased AC3 activity, decreased expression of many ORs, and display many axon growth and guidance errors, odor-evoked activity in cilia of mutant olfactory neurons remains largely intact.
KeywordsOlfactory sensory neurons β3GnT2 Adenylyl cyclase 3 Axonal convergence
Understanding the organization of connections in the mammalian olfactory system is a challenge because the rules used to generate a map of axon trajectories from the olfactory epithelium to the olfactory bulb (OB) appear to differ considerably from other sensory modalities, such as the visual and somatosensory systems [1–3]. It is now clear that regulation of adenylyl cyclase activity and generation of cAMP is one of the major contributors of guidance information in olfactory axons [4–6]. In fact, much of the influence that was initially attributed to odorant receptors (ORs) themselves has now been shown to result from OR-dependent cAMP signaling . In this regard, an important question is how olfactory sensory neurons (OSNs) regulate adenylyl cyclase 3 (AC3) activity, since cAMP is responsible not only for activation of the cyclic nucleotide-gated channel (CNG) in cilia but also for downstream signaling in axons via pathways that may regulate the activities of protein kinase A and the transcription factor, CREB .
We have previously shown that the glycosyltransferase β3GnT2 is expressed in OSNs and is the key enzyme in the synthesis of polylactosamine (PLN) glycans [6, 8, 9]. AC3 is heavily N-glycosylated with PLN glycans in OSNs, and its expression is significantly down-regulated on β3GnT2−/− axons . The severe olfactory developmental and axon guidance abnormalities in β3GnT2−/− mice appear in many respects to phenocopy wiring defects described for AC3 knockout mice where olfactory cAMP signaling is also reduced [10–12]. In both models, M72 axons are misguided specifically to multiple heterotypic glomeruli primarily in the ventromedial OB, and P2 axons are mostly lost from the postnatal OB. These changes in axon growth and guidance are due in part to the decrease in cAMP-dependent signaling in both mouse models resulting in altered expression of important axon guidance cues, such as neuropilin-1 and semaphorin-3A [6, 13].
Despite these many similarities, the major difference between the two mouse models is their respective abilities to detect and discriminate odors. AC3−/− mice are anosmic due to the absence of cAMP synthesis and the resulting inability to activate CNG channels in dendritic cilia . In contrast, although AC3 expression is significantly reduced in axons extending to the OB of β3GnT2−/− mice, AC3 traffics normally to cilia and although reduced amounts of cAMP are produced, adult β3GnT2−/− mice are not anosmic [6, 8]. In order to gain insight into olfactory discrimination in β3GnT2−/− mice, we compared OR gene expression, examined axon trajectories by immunocytochemistry with specific OR antibodies, and carried out an odorant discrimination task on WT and β3GnT2−/− mice. Results presented here show that many OR genes are significantly down-regulated in β3GnT2−/− mice such that only a small number of those axons make connections in the OB. In addition, other OR-specific axon subsets innervate inappropriate targets in the OB. These findings will be discussed in light of the fact that β3GnT2−/− mice can discriminate odors with considerable fidelity.
Odorant receptor alterations in β3GnT2−/− mice
Comparison of odorant receptor gene expression in β3GnT2 −/− and WT OEs
Odorant receptor expression in olfactory sensory neurons
8,162 +/− 1,062
8,008 +/− 1,668
−3.0 +/− 12.1
96,389 +/− 15,250
148,170 +/− 14,500
+59.0 +/− 19.8
7,579 +/− 521
7,073 +/− 1,424
−8.5 +/− 12.5
27,896 +/− 3,550
38,339 +/− 3,610
+38.8 +/− 6.2
15,957 +/− 1,833
22,161 +/− 2,183
+39.8 +/− 8.77
25,377 +/− 1,772
5,396 +/− 535
−78.7 +/− 1.7
Interestingly, as is the case in rats , the number of cells expressing different ORs varies significantly, often by several fold in WT mice. For example, there are more than 10 times more mOR256-17+ cells than M72+ neurons in the adult OE. However, although our sample is small, changes in expression in β3GnT2−/− mice do not appear to be related to the absolute number of cells expressing a given OR. For example, although their expression levels are about the same in WT mice, the number of mOR125-1+ cells increased by about one third in β3GnT2−/− mice, whereas the number of P2+ neurons decreased by more than 75% (Table 2).
Analysis of mOR256-17 axon guidance in β3GnT2−/− mice
In β3GnT2−/− OBs, mOR256-17 immunoreactive glomeruli are present in the OB but in more scattered positions on the lateral and medial surfaces. The mutant OBs are shaped somewhat differently from WT OBs in that they are shorter along the rostrocaudal axis and along the dorsoventral axis but not mediolaterally . In this example, which is typical of four OBs examined, a mOR256-17 immunoreactive glomerulus is present on the lateral surface of the OB (arrow in Figure 4C) in a position similar to those seen in the wild type OB. Three additional mOR256-17 positive glomeruli are also detected in more caudal sections of the ventral OB (arrows in Figure 4D, E, F). Even further caudally, three additional mOR256-17 glomeruli are visible in the ventral OB that appear to represent medially projecting axons (arrows in Figure 4G). One of these mutant glomeruli is in the approximate correct position compared to wildtype OB, but the others are located either more ventrally or more dorsally from their normal position. The mOR256-17 positive glomerulus in Figure 4H is the same very large glomerulus as the more dorsal glomerulus in Figure 4G. The aberrant positions of glomeruli in null mice is very similar from mouse to mouse, just as OR-defined glomeruli are found within a very restricted area of the OB in WT mice. We previously showed that this was also the case for M72 glomeruli . These results suggest that other guidance information is maintained in β3GnT2−/− mice that continues to steer axons to specific but aberrant targets.
The map of the β3GnT2−/− OB (Figure 5B) is smaller along the rostrocaudal axis but has similar dimensions to the WT OB along the mediolateral axis. As shown in this map, there are seven glomeruli in total (red circles in Figure 5B), compared with four glomeruli in the WT OB. Although glomeruli are not located in an absolutely fixed position from mouse to mouse, most glomeruli map to within 100 to two hundred microns of the position shown on this map. In addition, three of the mOR256-17 positive glomeruli on the lateral surface of the β3GnT2−/− OBs are near the ventral surface of the OB. On the medial surface of the mutant OB, one of the glomeruli is positioned identically to the WT medial glomeruli, but the other two glomeruli are scattered ventrally and dorsally.
Axons from under-represented ORs extend into the OB
Gene array analysis showed that mOR28 mRNA was reduced more than any other OR and RT-qPCR results indicated that mOR28 mRNA was significantly decreased in β3GnT2−/− OEs compared to wild type OEs (Figure 1). Immunocytochemical analysis (Figure 6C, D) confirms that the number of mOR28+ neurons is decreased by about 75% in β3GnT2−/− OEs. In spite of the severe loss of mOR28 expression in β3GnT2−/− mice, immunoreactive axon projections are visible in the nerve layer of the OB and can be seen targeting glomeruli in the same location that mOR28+ axons normally form glomeruli in WT mice (arrows in Figure 6E,F).
Neuronal activity is unchanged in β3GnT2 null mice
Previous studies have identified two distinct mechanisms for the regulation of OSN gene expression by olfactory signaling reviewed in . One class of genes, including axon guidance cues such as Nrp1 and Sema3A, are directly modulated by cAMP levels established by AC3 [4, 13]. For a second class of genes, transcriptional levels are determined by neuronal activity downstream of AC3. This molecular subset exhibits OE expression changes in either naris occluded mice or anosmic cyclic nucleotide gated channel subunit A2 (CNGA2) null mice that are not directly cAMP-dependent [5, 17]. For example, microarray analysis studies revealed that RNA levels of the Leucine Rich Repeat Containing 3b (Lrrc3b) gene are decreased more than ten-fold in CNGA2 null OEs relative to WT mice, while those of the calcium binding protein calretinin are elevated nearly four-fold by the loss of activity.
To confirm these results (Figure 7B), we used qPCR to determine expression levels of activity-dependent genes relative to known markers for the neuron populations that undergo dynamic changes in β3GnT2−/− mice. Expression levels of Lrrc3b, S100A5 and Kirrel2 decrease in parallel with those of OMP, a marker for the mature neurons that are lost in β3GnT2−/− mice . Because of the loss of mature OSNs, immature neurons expressing GAP43 increase proportionally in the β3GnT2−/− OE . Despite this, calretinin levels are not significantly altered by the loss of β3GnT2, and there is no redistribution to more apical layers, as reported for CNGA2 knockout mice . These results suggest that neuronal activity in the localized environment of olfactory cilia is not severely compromised in β3GnT2−/− mice compared with CNGA2 null mice.
β3GnT2 null mice have minor olfactory discrimination deficits
The analysis shows that β3GnT2−/− mice were able to discriminate all six odor pairings but that they had a significant deficit in their ability to discriminate three of the six odor pairings either on Day 3 or Day 4 compared to littermate controls (asterisks in Figure 8). On Day 4, null mice showed a deficit to two of the six odors, citronellal and decanal, both 10 carbon aldehydes but with several structural differences. Decanal was the only odor to which β3GnT2−/− mice consistently displayed a deficit on both Days 3 and 4. Had the null mice been tested for their ability to discriminate between enantiomers or mixtures of enantiomers, it is likely that further deficits would have been revealed.
Olfactory perception critically depends on the formation of a functional olfactory map in which neurons expressing a given receptor converge on conserved locations in the olfactory bulb. We have previously shown that mice lacking β3GnT2 display abnormal olfactory system development. These mice have significant errors in the guidance of sensory axons to proper targets in the OB . In WT mice AC3 is directly glycosylated by β3GnT2 but in knockout mice this form of polylactosamine (PLN) glycosylation is absent and AC3 enzymatic activity is decreased by 80 to 90% . In order to better understand the role of PLN-glycosylation in olfactory development, we have analyzed the expression of ORs in β3GnT2−/− mice and further examined guidance of specific axon subsets. Results presented here show that in spite of depleted cAMP levels, significant decreases in expression of many ORs, and the presence of many wiring errors, β3GnT2−/− mice have a surprising ability to discriminate odors. These results are in agreement with previous studies suggesting that mutations that alter the organization of the olfactory system may have relatively minor effects on associative behaviors such as olfactory discrimination . The odor-specific patterns of neural activity generated in the OBs of β3GnT2−/− mice are likely to be significantly different from WT controls in many instances, due to changes in OR expression and alterations in glomerular targeting. Although these anatomical perturbations are likely to contribute to the differences observed in our behavioral testing paradigm, the fact that odor discrimination in mutant mice is largely intact suggests that odor-specific patterns of neuronal activity need not be the same in individual animals for them to discriminate odors with significant structural diversity.
Expression of many ORs is reduced in β3GnT2−/− mice
In this current study, profiling global gene expression in OSNs using microarrays revealed that many other ORs were likely to be misregulated in the β3GnT2−/− OE. Following up on these findings with detailed RT-qPCR analyses, we identified three ORs that were significantly increased in expression in β3GnT2−/− mice and three that were significantly decreased in expression. In order to determine whether these changes were the result of changes in expression levels or of differences in cell number, we performed in situ hybridization studies of six ORs also varying in chromosomal location, and OE zone. The results indicate that mRNA levels for each OR analyzed correlate closely with the number of OR-expressing OSNs that are maintained, suggesting that OR transcriptional levels per neuron are relatively steady. One possible explanation for the changes in expression of these various neuronal populations is that less active neurons may be lost due to competition with more active neurons. Although odor-evoked activity plays a limited role in establishment of the olfactory map, decreased sensory activity can increase the number of heterogeneous glomeruli  and activity-dependent competition may contribute to segregation of axons and refinement of connections in the OB . Another possibility is that switching may occur from one OR gene to another[22, 23], although we have no evidence that this takes place more frequently in β3GnT2−/− mice than in controls. When an OR gene is deleted, affected OSNs compensate by expressing a different OR, although the replacement receptor would have different binding characteristics . Thus, competition may favor neurons that receive greatest stimulation from a limited repertoire of odorants in their environment.
Olfactory discrimination is reduced in β3GnT2−/− mice
Although a direct relationship between correct axon targeting and olfactory discrimination has not been established, several studies have shed considerable light on this issue. On the one hand, rats retained most of their olfactory discrimination following surgical removal of significant portions of the target . In contrast, accurate axon targeting in the DII region of the OB appeared to be required for responsiveness to aversive cues . Several other strains of transgenic mice with reduced OR expression or neuronal activity have been tested for their ability to discriminate odors. Using a water reward method to distinguish paired odors, M71 transgenic mice, which under-express many ORs, were able to discriminate between structurally unrelated odors and even between enantiomers but were unable to distinguish mixtures of enantiomers . However, it is not clear how much discriminatory ability is conferred by the over-represented OR, M71, as opposed to the under-expressed ORs . Similarly, although AC3 knockout mice are completely anosmic, AC3 heterozygous mice were shown to have a significant olfactory discrimination deficit . Using either an olfactory avoidance method or a food reward-based test, they showed that AC3 heterozygous mice could discriminate lilial and citralva approximately 50% as well as WT mice, commensurate with a 50% reduction in the levels of AC3. β3GnT2−/− mice express only 10 to 20% of the WT levels of AC3, have reduced levels of OR expression and also axon guidance defects as shown here and previously documented [6, 8]. We, therefore, tested β3GnT2−/− mice for their ability to discriminate odors using the same food-based reward paradigm that revealed a deficit in AC3 heterozygous mice. Due to the severe nature of the anatomical, biochemical and signaling deficits seen in β3GnT2−/− mice, we tested odors that were structurally dissimilar (although geraniol, citralva and citronellal have some common features) but had similar adenylyl cyclase stimulatory capabilities. Furthermore, some of the odors tested were ones that had previously been tested in AC3 transgenic mice. For example, AC3 heterozygous mice display a gene-dose dependent decrease in ability to discriminate citralva , suggesting that olfactory discriminatory ability is directly related to the levels of AC3 protein in cilia. In contrast, discrimination of citralva by β3GnT2−/− mice was not statistically different from WT mice. Although AC3 is decreased on olfactory axons in β3GnT2−/− mice, the levels of AC3 protein in residual OSN cell bodies and cilia is relatively normal , suggesting that signaling required for neuronal activity is largely maintained in null OSN cilia.
Additional examples of axon guidance errors in β3GnT2−/− mice
We show here, in addition to the changes in OR expression, further examples of aberrant axon guidance in β3GnT2−/− mice. Using immunocytochemical techniques, we showed that mOR256-17+ axons are mistargeted to multiple glomeruli on the medial and lateral surfaces of the OB. However, some mOR256-17+ axons form a small glomerulus very close to where their normal target should be located. Furthermore, even though only a few I7+ and mOR28+ axons innervate glomeruli in the adult OB, these axons never reach the level required to form their own unique pair of glomeruli. It is possible that just a small number of OR-specific axons connecting to mitral or tufted cells in the correct targeting region of the OB is sufficient to transduce a signal that is correctly interpreted in the olfactory cortex. These results suggest that although a smaller number of neurons expressing a given OR will likely decrease the probability that an odorant-binding event will lead to perception of that odor, only a small number of connections may actually be required for successful transduction .
Odor-evoked activity is maintained in β3GnT2−/− mice
Olfactory axon guidance is orchestrated via a signaling cascade that includes G protein-coupled receptors, AC3 activation, cAMP synthesis and a downstream pathway involving PKA and CREB [4, 28–30]. Thus, activation of AC3 is the key regulator of signaling pathways that subsequently control expression of a number of axon guidance and adhesion molecules, including ephrins, kirrels, neuropilin-1, Sema3A and BIG2 [6, 29, 31, 32]. Importantly though, we show here that odor-evoked activity dependent gene transcription is unaffected in β3GnT2−/− OEs, further supporting the possibility that AC3 activity is preferentially preserved in cilia of these null mice. Interestingly, in many CNS neurons and glia where β3GnT2 is not expressed, AC3 expression is restricted to primary cilia . AC3 is one of several proteins that are actively transported into cilia by a family of proteins associated with renal cystic disease, MKS1 and 3 . Tectonic1, a member of a family of signal-sequence-containing proteins that forms a membrane complex with MKS and other proteins, is required for the ciliary localization of AC3 . OSNs appear to express AC3 differently than CNS neurons and most other cells. Although AC3 is heavily concentrated in WT olfactory cilia, it is also expressed in cell soma and on axons [6, 12]. In the absence of PLN-glycosylation, AC3 expression on axons is greatly reduced, although the normal levels of AC3 detected in OSN cells bodies and cilia in β3GnT2 −/− OEs suggest that the remaining AC3 may preferentially localize to cilia . This would support a hypothesis that a role for β3GnT2 is to ensure that a significant percentage of AC3 protein is not transported to cilia in OSNs, rather than PLN on AC3 and other surface glycoproteins is responsible for maintaining their axonal expression. In fact, all of the components of this canonical transduction process are expressed in axons and it has been suggested that local cAMP synthesis could control expression of guidance proteins specifically in axons .
Olfactory discrimination testing shows that β3GnT2−/− mice have a modest deficit in their ability to distinguish odors. This is in spite of the fact that hundreds of ORs are underrepresented in the OE and many probably do not innervate normal glomeruli in the OB. Furthermore, axon guidance in β3GnT2−/− mice is aberrant, as shown by the abnormal position and increased number of mOR256-17+ glomeruli in the OB of knockout mice. Moreover, we have previously shown that AC3 activity is decreased by 80 to 90% in β3GnT2−/− mice, such that guidance and adhesion molecules such as neuropilin-1 and kirrel2 are poorly expressed in axons .
The β3GnT2−/− mouse is a unique model of reduced cAMP production in which most of the residual AC3 activity appears to be concentrated in cilia where odor-evoked transduction is largely intact. In contrast, cAMP-dependent transcriptional regulation required for proper axon guidance is virtually absent. An important question that remains unanswered is to what degree glomerular heterogeneity can be tolerated before olfactory discrimination is significantly compromised. Results presented here would suggest that the mouse olfactory system may have a large capacity to withstand down regulation of cAMP signaling, significant deletions in the OR repertoire, alterations in guidance molecule expression and errors in wiring before suffering significant losses of olfactory perception.
Wild type and β3GnT2−/− mouse littermates were generated from β3GnT2 het/het crosses. PCR was used to genotype the offspring, with a 700-bp fragment amplified from the wildtype β3GnT2 allele and a 1,071–bp fragment amplified from the β3GnT2−/− allele. β3GnT2−/− mice were established from the KST308 embryonic stem cell line, which harbors a secretory trap vector insertion in the β3GnT2 coding sequence as previously described [8, 37]. Mice were housed according to standard National Institutes of Health and institutional care guidelines, and procedures were approved by the University of Massachusetts Medical School Institutional Animal Care and Use Committee (Worcester, MA, USA).
In situ hybridization
Digoxigenin (DIG)-labeled sense and antisense riboprobes were transcribed from cDNAs containing subcloned OR coding sequences using vector-specific RNA polymerases and DIG labeling mix (Roche Molecular Biochemicals, Pleasanton, CA, USA). For in situ analysis of adult mouse OEs, age P28 mice were deeply anesthetized and transcardially perfused with 4% Formaldehyde in 0.1 M phosphate buffer (pH 7.4). Brains were removed and further fixed overnight in 4% Formaldehyde at 4°C followed by immersion in 30% sucrose. Bone thickness in the posterior region of the snout from the orbital area to the OB was reduced using surgical knives. The dissected samples were frozen on dry ice, coronally sectioned at 20-μM thickness with a cryostat, and then mounted on Superfrost plus microscope slides, (Thermo Fisher Scientific, Waltham, MA USA). After prehybridization and hybridization, the DIG-labeled RNA hybrids were detected with an anti-DIG Fab fragment conjugated to alkaline phosphatase (Roche Molecular Biochemicals) at a dilution of 1:1,000 overnight at 4°C. The color reaction was produced with nitro blue tetrazolium chloride and 5-bromo-4-chloro-3-indolyl phosphate with levamisole added to block endogenous phosphatase activity.
Histology and Immunocytochemistry
Tissue was prepared by transcardial perfusion using 2% PLP (paraformaldehyde-lysine-periodate) fixation in 0.1 M phosphate buffer (PB), pH 7.4. Antibodies to mOR256-17 are sensitive to fixation conditions and we determined empirically that immunoreactivity on frozen tissue sections was enhanced using 2% PLP compared to 4% paraformaldehyde or other stronger fixatives. Heads were subsequently removed and postfixed 16 hrs in the same fixative solution, followed by cryoprotection in 30% sucrose. After embedding, tissue sections were prepared on a Microm HM505E cryostat at 50 μM thickness and were then immediately thawed in transwell boats filled with PBS for staining as free floating sections. Tissues were blocked for one hour in 2% BSA, then incubated overnight at 4°C with the primary antibody for mOR156-17  or mOR28  and diluted in 1% BSA/PBS/0.3% Triton X-100. After washing, tissue sections were further incubated for two hours at room temperature with species-specific secondary biotinylated antibody and visualized with the Vectastain ABC peroxidase kit and 3,3’-diaminobenzadine tetrahydrochloride (Vector Laboratories, Burlingame, CA USA), or with Cy3-conjugated (Jackson Immunoresearch, West Grove, PA USA) or Alexa Fluor 488 (Invitrogen, Grand Island, NY USA) conjugated secondary antibodies. Images were captured using a Zeiss Axioplan photomicroscope equipped with a Spot RT camera (Diagnostic Instruments (Sterling Heights MI USA).
Specific OR-expressing neurons in PD28 OEs of β3GnT2−/− and WT control mice were quantified using a Nikon Eclipse E400 microscope (MVI, Inc., Avon MA USA) at 100X. The complete OE cavity was serial sectioned at 20 μM and collected on 20 to 22 slides per case. Each in situ hybridization experiment included a pair of β3GnT2−/− and WT slides for each OR probe. Each probe was used on three different pairs of mice. All the sections from one slide of each genotype were counted and used for analysis. These counts were compared using a paired two-way ANOVA to control for any variability, which may occur between each in situ experiment. In addition, pairs of slides within a case, using one probe, were counted and compared and found to be less than 3% different, which was not significant (NS). Thus, we extrapolated the total amount of labeled cells for each OR by adjusting the counts to the total number of slides in each case (Table 2). Statistical analysis was performed using SigmaStat 2.0 (Systat software, San Jose, CA USA).
Real time reverse transcriptase quantitative PCR
RNA was extracted from microdissected olfactory epithelia of 6 β3GnT2+/+ and β3GnT2−/− mice at six months of age using Trizol Reagent (Invitrogen), and cDNA prepared as described previously (Henion et al., 2011). Quantitative PCR (qPCR) was performed with oligonucleotides designed using online Primer3 software (version 0.4.0). Primer sequences used for template amplification are available upon request. Samples were amplified in triplicate using GoTaq Polymerase (Promega, Fitchburg, WI, USA) in a StepOnePlus Real-Time PCR System (Applied Biosystems, Life Technologies, Grand Island, NY, USA). Relative gene expression levels were determined by the Comparative CT (threshold cycle) method after normalization to RNA polymerase 2 as an endogenous reference.
Gene array hybridization
OEs from adult mice were collected in PBS on ice. Tissue samples were homogenized using TRIzol (Invitrogen, Carlsbad, CA, USA) and the RNA was collected in the aqueous phase after chloroform extraction. Subsequently, Isopropyl Alcohol was used to precipitate the RNA, followed by washing with 75% ethanol, air-dried, and redissolved in RNAse-free DEPC H2O. After this RNA isolation, a Qiagen RNeasy mini kit (Qiagen, Valencia, CA, USA) was used to further purify the RNA, and the yield analyzed with a DU 650 Spectrophotometer (Beckman Coulter Inc, Brea, CA, USA). Yields per mouse OE measured at an absorbance of 260 nm were 10 to 20 ug RNA.
Affymetrix gene array technology was used to compare the gene profiles between β3GnT2 WT and mutant mouse strains. Individual samples were hybridized to 12 gene chips in a high-density oligonucleotide array (Affymetrix Mouse Gene 1.0 ST Array, 28,853 mouse genes (1,100 OR genes)/chip) that uses 25-mer probes distributed across the transcribed regions of each gene, with a median of 26 probes per gene. The Ambion WT Expression kit (Applied Biosystems, Foster City, CA, USA) was used to synthesize first and second strand cDNA, and generate the purified sense strand for the Affymetrix gene chip WT Terminal labeling kit (Affymetrix, Santa Clara, CA, USA). The single stranded cDNA produced by the Ambion kit was fragmented and labeled using the GeneChip WT Terminal Labeling Kit. The product was then hybridized to the chip for 16 to 17 hours at 45°C, washed, stained and scanned using the Affymetrix GeneChip Array Scanner. The log based signal values were generated using the RMA algorithm in Expression Console. For each pair of samples, results of each probe were compared and an “R” value was calculated. The median of the “R” values of each probe set (R_median) was used for filtering the potentially differential gene expression. No normalization was conducted.
Olfactory discrimination task
β3GnT2+/+ and β3GnT2−/− mice 9 to 13 weeks old were trained in an olfactory discrimination task . Pairs of odors, each known to elicit strong cAMP responses were used in the sand buried food task to measure an animal’s ability to associate an odor with a reward . The mice were food-deprived for 24 hours before the first day of testing began then maintained on a restricted diet throughout the four day trial. On Day 1, the mice were allowed to locate a food reward in the sand. Day 2 was a training day in which each mouse was presented with a food reward in the sand, which was associated with a test odor. The test odors were shifted to different positions within the cage during the training and subsequent testing days. The training period consisted of six 20-minute time periods with 10-minute intervals, where each mouse would have an opportunity to locate the food reward. Early in the training the mice were allowed additional time, if necessary, to locate the food reward. On Day 3, mice were given a choice between a novel odor and the same test odor presented on Day 2. Subsequent sets of six trials each on Days 3 and 4 were scored either correct or incorrect accordingly to which dish each mouse would begin digging. Days 3 and 4 consisted of two separate sets of trials. In the first set of trials the mice were tested without a buried food reward, while in the second set of trials the reward was present.
Adenylyl cyclase 3
Cyclic nucleotide gated channel
Cyclic nucleotide response element binding protein
Odorant receptor OSN, olfactory sensory neuron
Protein kinase A
Reverse transcriptase quantitative polymerase chain reaction
This work was supported by the National Institutes of Health Grant DC00953. We are grateful to Gilad Barnea, Brown University for the generous gift of mOR28 antibodies, to Phyllis Spatrick, UMass Genomics Core Facility for carrying out the Affymetrix GeneChip hybridization experiments.
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